JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BEX1_chrX_103057651_103069171	0/0	g0038	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0039	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0040	1	0	0	0	0	1	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0041	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0042	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0043	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	g0044	1	0	0	1	0	0	BEX1	chrX	103057651	103069171
BEX2_chrX_103304346_103315990	0/1	g0001	155	47	24	65	1	17	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0002	75	4	3	60	3	5	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	1/0	g0003	31	6	12	0	5	7	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0004	12	0	8	0	1	3	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0005	8	1	6	0	1	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0006	4	4	0	0	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0007	4	0	0	4	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0008	3	2	1	0	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0009	2	0	0	2	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0010	1	0	0	1	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0011	1	0	0	1	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0012	1	0	0	1	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0013	1	1	0	0	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0014	1	1	0	0	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0015	1	1	0	0	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0016	1	1	0	0	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0017	1	1	0	0	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0018	1	1	0	0	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0019	1	0	0	1	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0020	1	0	0	1	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0021	1	0	0	1	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0022	1	0	0	1	0	0	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	g0023	1	0	1	0	0	0	BEX2	chrX	103304346	103315990
BEX3_chrX_103371538_103383164	1/1	g0001	282	70	47	125	7	31	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	g0002	3	0	0	3	0	0	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	g0003	3	0	2	0	0	1	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	g0004	2	0	0	2	0	0	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	g0005	2	0	0	2	0	0	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	g0006	2	0	1	1	0	0	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	g0007	1	0	0	1	0	0	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	g0008	1	0	1	0	0	0	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	g0009	1	0	0	1	0	0	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	g0010	1	0	0	1	0	0	BEX3	chrX	103371538	103383164
BEX4_chrX_103210108_103222246	0/0	g0001	109	52	6	41	0	10	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0002	71	1	17	45	3	5	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	1/0	g0003	58	14	14	17	5	7	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/1	g0004	50	5	14	22	1	7	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0005	30	0	5	25	0	0	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0006	5	5	0	0	0	0	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0007	2	0	0	2	0	0	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0008	1	0	1	0	0	0	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0009	1	0	0	0	0	1	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0010	1	0	1	0	0	0	BEX4	chrX	103210108	103222246