JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BEX4_chrX_103210108_103222246	0/0	g0011	1	0	0	1	0	0	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0012	1	1	0	0	0	0	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0013	1	0	0	0	0	1	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0014	1	0	0	1	0	0	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0015	1	0	1	0	0	0	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	g0016	1	0	0	1	0	0	BEX4	chrX	103210108	103222246
BEX5_chrX_102148712_102160977	0/0	g0001	140	6	31	87	2	14	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/1	g0002	52	22	16	0	3	10	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0003	47	14	8	18	5	2	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0004	14	0	1	13	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0005	13	0	0	13	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0006	10	4	0	2	1	3	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0007	7	7	0	0	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0008	7	5	0	2	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0009	6	2	1	0	0	3	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0010	4	4	0	0	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0011	4	0	0	4	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0012	4	4	0	0	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0013	2	2	0	0	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0014	2	2	0	0	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0015	2	0	0	2	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	1/0	g0016	1	0	0	0	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0017	1	0	0	0	0	1	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0018	1	1	0	0	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0019	1	0	0	0	0	1	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0020	1	0	0	1	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0021	1	0	0	1	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0022	1	1	0	0	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0023	1	0	0	1	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0024	1	1	0	0	0	0	BEX5	chrX	102148712	102160977
BEX5_chrX_102148712_102160977	0/0	g0025	1	1	0	0	0	0	BEX5	chrX	102148712	102160977
BFAR_chr16_14627951_14674236	0/0	g0001	10	0	1	7	0	2	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0002	7	1	0	5	0	1	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0003	6	1	2	2	1	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0004	4	1	0	3	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0005	4	0	0	3	0	1	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0006	4	0	2	0	1	1	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0007	3	0	2	1	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0008	3	0	1	2	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0009	3	2	1	0	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0010	3	0	1	1	1	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0011	3	0	0	3	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0012	2	2	0	0	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0013	2	0	1	0	1	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0014	2	2	0	0	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0015	2	0	0	2	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0016	2	2	0	0	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0017	2	1	0	1	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0018	2	0	0	2	0	0	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	g0019	2	0	0	2	0	0	BFAR	chr16	14627951	14674236