JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BGN_chrX_153489980_153514546	0/0	g0204	1	1	0	0	0	0	BGN	chrX	153489980	153514546
BHLHA15_chr7_98206439_98220457	1/1	g0001	150	51	33	43	11	10	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0002	103	13	23	48	2	17	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0003	95	16	10	50	2	17	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0004	82	1	15	63	0	3	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0005	8	7	1	0	0	0	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0006	7	2	2	0	0	3	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0007	5	5	0	0	0	0	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0008	2	2	0	0	0	0	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0009	1	0	0	1	0	0	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0010	1	0	0	1	0	0	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0011	1	1	0	0	0	0	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	g0012	1	0	0	0	1	0	BHLHA15	chr7	98206439	98220457
BHLHA9_chr17_1265444_1276815	1/1	g0000	442	96	84	196	18	46	BHLHA9	chr17	1265444	1276815
BHLHE22_chr8_64575365_64588627	1/1	g0000	432	98	74	194	16	48	BHLHE22	chr8	64575365	64588627
BHLHE23_chr20_63000927_63011964	1/1	g0000	446	100	82	200	16	46	BHLHE23	chr20	63000927	63011964
BHLHE40_chr3_4974437_4990323	0/1	g0001	99	13	24	52	5	4	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0002	95	5	18	60	3	9	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0003	65	28	7	19	4	7	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0004	52	0	18	28	1	5	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0005	16	0	0	16	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0006	11	10	1	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0007	7	0	3	1	1	2	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0008	7	0	0	3	0	4	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0009	5	5	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0010	5	3	0	1	1	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0011	5	0	0	5	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0012	5	4	0	1	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0013	4	0	0	1	1	2	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0014	4	2	1	0	0	1	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0015	3	1	2	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0016	3	0	1	1	0	1	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0017	2	1	1	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	1/0	g0018	2	0	0	1	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0019	2	1	0	0	0	1	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0020	2	2	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0021	2	0	0	2	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0022	2	0	0	0	0	2	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0023	2	2	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0024	2	0	0	2	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0025	2	0	2	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0026	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0027	1	0	0	1	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0028	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0029	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0030	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0031	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0032	1	0	0	1	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0033	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0034	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323