JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BHLHE40_chr3_4974437_4990323	0/0	g0035	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0036	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0037	1	0	1	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0038	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0039	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0040	1	0	0	0	0	1	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0041	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0042	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0043	1	0	0	1	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0044	1	0	0	1	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0045	1	0	0	0	0	1	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0046	1	0	0	1	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0047	1	0	1	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0048	1	0	0	0	1	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0049	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0050	1	0	1	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0051	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0052	1	0	0	0	1	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0053	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0054	1	0	0	1	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0055	1	1	0	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0056	1	0	0	1	0	0	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	g0057	1	0	1	0	0	0	BHLHE40	chr3	4974437	4990323
BHLHE41_chr12_26115030_26130037	0/0	g0001	121	7	27	71	4	12	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	1/0	g0002	112	44	17	34	6	10	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0003	74	4	6	50	4	10	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0004	13	10	0	2	0	1	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0005	12	0	0	12	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0006	11	10	1	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0007	8	1	0	0	0	7	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0008	6	6	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0009	5	0	0	5	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0010	4	0	1	0	2	1	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0011	4	0	4	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0012	4	4	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0013	4	2	2	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0014	3	0	3	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0015	2	0	0	0	0	2	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0016	2	0	2	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0017	2	0	0	2	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0018	2	2	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0019	2	0	0	2	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0020	2	0	0	2	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0021	2	0	2	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0022	1	0	0	1	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0023	1	0	1	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0024	1	1	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0025	1	0	0	1	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0026	1	1	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0027	1	0	0	1	0	0	BHLHE41	chr12	26115030	26130037