JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BHLHE41_chr12_26115030_26130037	0/0	g0028	1	1	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/1	g0029	1	0	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0030	1	0	0	0	0	1	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0031	1	1	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0032	1	0	0	1	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0033	1	0	1	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0034	1	0	0	1	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0035	1	0	0	1	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0036	1	0	1	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0037	1	0	1	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0038	1	0	0	1	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0039	1	0	0	1	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0040	1	0	1	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0041	1	0	0	0	0	1	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0042	1	0	1	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0043	1	1	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0044	1	0	1	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0045	1	1	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0046	1	1	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0047	1	1	0	0	0	0	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	g0048	1	0	0	0	0	1	BHLHE41	chr12	26115030	26130037
BHMT2_chr5_79064767_79095069	0/0	g0001	22	1	6	11	1	3	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0002	13	1	4	7	0	1	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0003	11	2	0	5	0	4	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0004	11	1	0	9	0	1	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0005	11	0	1	10	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0006	10	0	0	10	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0007	9	0	0	5	0	4	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0008	9	0	8	0	1	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0009	7	0	0	6	0	1	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0010	7	7	0	0	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0011	6	0	3	0	2	1	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0012	6	6	0	0	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0013	4	0	3	0	0	1	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0014	4	0	0	4	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0015	4	4	0	0	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0016	4	0	0	4	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0017	4	0	1	2	0	1	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0018	4	1	2	0	0	1	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0019	3	0	0	3	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0020	3	0	3	0	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0021	3	0	2	1	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0022	3	1	2	0	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0023	3	0	0	2	0	1	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0024	3	3	0	0	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0025	3	0	0	3	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0026	3	0	0	3	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0027	2	2	0	0	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0028	2	0	0	2	0	0	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	g0029	2	0	0	2	0	0	BHMT2	chr5	79064767	79095069