JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BID_chr22_17729138_17779469	0/0	g0336	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0337	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0338	1	0	0	1	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0339	1	0	0	1	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0340	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0341	1	0	0	0	0	1	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0342	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0343	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0344	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0345	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0346	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0347	1	0	1	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0348	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0349	1	0	1	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0350	1	0	0	1	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0351	1	0	0	1	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0352	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0353	1	1	0	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0354	1	0	1	0	0	0	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	g0355	1	0	1	0	0	0	BID	chr22	17729138	17779469
BIK_chr22_43105750_43134712	0/1	g0001	34	2	9	18	2	2	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0002	26	0	5	19	0	2	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0003	22	0	12	3	2	5	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0004	10	1	5	0	2	2	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0005	9	0	0	9	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0006	8	0	0	8	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0007	7	0	0	7	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0008	7	1	2	2	2	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0009	5	0	0	5	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0010	5	0	5	0	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0011	5	1	1	0	3	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0012	5	5	0	0	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0013	5	0	0	5	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0014	5	0	2	2	0	1	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0015	4	0	0	4	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0016	4	3	1	0	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0017	4	0	2	0	0	2	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0018	4	1	2	1	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0019	4	0	0	4	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0020	4	0	0	0	0	4	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0021	3	3	0	0	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0022	3	0	0	0	1	2	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0023	3	0	0	3	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0024	3	0	1	0	1	1	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0025	3	0	1	2	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0026	2	2	0	0	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0027	2	0	0	2	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0028	2	0	2	0	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0029	2	2	0	0	0	0	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	g0030	2	2	0	0	0	0	BIK	chr22	43105750	43134712