JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BIRC5_chr17_78209253_78230635	0/0	g0002	43	15	3	24	1	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0003	39	6	7	18	2	6	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0004	27	5	9	9	1	3	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0005	25	0	0	24	0	1	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0006	23	0	0	23	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/1	g0007	22	2	8	1	2	8	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0008	16	0	6	0	2	8	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0009	9	7	2	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0010	8	7	1	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0011	8	1	0	6	0	1	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0012	8	0	0	8	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0013	7	0	0	7	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0014	7	1	6	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	1/0	g0015	6	0	4	0	0	1	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0016	6	0	0	6	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0017	5	5	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0018	5	0	4	0	0	1	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0019	4	4	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0020	3	0	0	3	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0021	3	1	1	0	1	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0022	3	0	0	3	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0023	3	0	0	3	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0024	3	0	3	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0025	3	3	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0026	3	1	2	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0027	2	0	1	1	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0028	2	0	1	0	0	1	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0029	2	1	0	0	0	1	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0030	2	2	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0031	2	0	0	1	1	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0032	2	2	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0033	2	0	0	1	1	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0034	2	2	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0035	2	0	2	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0036	2	0	0	2	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0037	2	2	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0038	2	2	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0039	2	0	0	2	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0040	2	0	0	2	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0041	1	1	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0042	1	1	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0043	1	1	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0044	1	1	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0045	1	0	0	1	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0046	1	0	0	1	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0047	1	1	0	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0048	1	0	0	1	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0049	1	0	0	0	0	1	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0050	1	0	1	0	0	0	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	g0051	1	0	1	0	0	0	BIRC5	chr17	78209253	78230635