JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BIRC6_chr2_32352023_32623878	0/0	g0241	1	0	0	1	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0242	1	0	0	1	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0243	1	1	0	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0244	1	0	0	0	1	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0245	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0246	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0247	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0248	1	0	0	0	0	1	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0249	1	0	0	1	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0250	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0251	1	0	0	0	0	1	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0252	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0253	1	0	0	0	1	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0254	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0255	1	0	0	0	1	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0256	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0257	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0258	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0259	1	0	0	0	0	1	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0260	1	0	0	0	1	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0261	1	1	0	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0262	1	1	0	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0263	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0264	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0265	1	0	0	1	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0266	1	0	0	0	0	1	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0267	1	0	0	0	0	1	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0268	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0269	1	0	1	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0270	1	0	0	1	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	1/0	g0271	1	0	0	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0272	1	1	0	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0273	1	1	0	0	0	0	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	g0274	1	0	0	1	0	0	BIRC6	chr2	32352023	32623878
BIRC7_chr20_63230905_63245495	1/0	g0001	80	22	22	15	7	13	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0002	62	3	11	38	1	9	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0003	56	9	7	36	1	3	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/1	g0004	11	0	2	2	3	3	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0005	6	6	0	0	0	0	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0006	6	0	4	0	1	1	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0007	5	5	0	0	0	0	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0008	5	3	1	1	0	0	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0009	4	4	0	0	0	0	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0010	4	4	0	0	0	0	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0011	4	4	0	0	0	0	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0012	3	0	0	0	0	3	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0013	3	0	3	0	0	0	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0014	3	2	0	1	0	0	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0015	3	2	1	0	0	0	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	g0016	2	2	0	0	0	0	BIRC7	chr20	63230905	63245495