JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BLACAT1_chr1_205429886_205461045	0/0	g0202	1	0	0	0	0	1	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0203	1	0	0	0	0	1	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0204	1	0	0	1	0	0	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0205	1	0	0	1	0	0	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0206	1	1	0	0	0	0	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0207	1	0	0	1	0	0	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0208	1	0	0	0	0	1	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0209	1	0	0	1	0	0	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0210	1	0	0	0	0	1	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0211	1	0	1	0	0	0	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0212	1	0	0	0	1	0	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0213	1	0	1	0	0	0	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	g0214	1	0	0	0	0	1	BLACAT1	chr1	205429886	205461045
BLCAP_chr20_37512417_37532876	0/0	g0001	75	4	16	40	3	12	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0002	49	2	15	29	2	1	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0003	26	17	7	0	0	2	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0004	23	4	5	14	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0005	16	0	0	16	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0006	12	2	4	0	4	2	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0007	8	0	8	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0008	8	8	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0009	6	1	0	5	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0010	5	5	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0011	5	0	0	5	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0012	5	0	0	0	0	5	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0013	5	0	0	5	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0014	4	4	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0015	4	0	0	4	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0016	4	0	1	3	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0017	4	4	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0018	4	4	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0019	3	0	0	3	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0020	3	0	0	3	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0021	3	0	3	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0022	3	0	0	3	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0023	3	0	0	3	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/1	g0024	3	1	0	1	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0025	3	0	0	3	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0026	3	3	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0027	3	0	0	0	0	3	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0028	2	2	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0029	2	2	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0030	2	2	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0031	2	2	0	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0032	2	0	2	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0033	2	0	0	1	0	1	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0034	2	0	0	2	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0035	2	0	2	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0036	2	0	2	0	0	0	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	g0037	2	2	0	0	0	0	BLCAP	chr20	37512417	37532876