JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BLK_chr8_11489387_11569599	0/0	g0264	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0265	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/1	g0266	1	0	0	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0267	1	1	0	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0268	1	0	0	0	0	1	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0269	1	0	0	0	0	1	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0270	1	0	0	0	1	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0271	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0272	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0273	1	0	0	0	1	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0274	1	1	0	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0275	1	0	0	0	0	1	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0276	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0277	1	0	0	0	0	1	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0278	1	0	0	0	0	1	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0279	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0280	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0281	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0282	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0283	1	0	0	0	0	1	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0284	1	0	0	0	0	1	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0285	1	1	0	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0286	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0287	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0288	1	0	0	0	1	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0289	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0290	1	0	0	0	1	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0291	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0292	1	1	0	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0293	1	0	1	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0294	1	1	0	0	0	0	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	g0295	1	1	0	0	0	0	BLK	chr8	11489387	11569599
BLMH_chr17_30243203_30296944	0/0	g0001	9	0	0	6	0	3	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0002	7	0	2	5	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0003	6	0	2	4	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0004	5	2	3	0	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0005	5	0	0	5	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0006	4	4	0	0	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0007	4	0	4	0	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0008	4	0	4	0	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0009	3	3	0	0	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0010	3	0	0	3	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0011	3	1	2	0	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0012	3	3	0	0	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0013	3	3	0	0	0	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0014	3	0	2	0	0	1	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0015	3	0	2	0	1	0	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0016	3	2	0	0	0	1	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0017	3	0	0	2	0	1	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	g0018	3	2	1	0	0	0	BLMH	chr17	30243203	30296944