JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BLOC1S1_chr12_55711046_55724703	0/0	g0007	7	2	0	3	0	2	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0008	5	2	1	0	0	2	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0009	4	4	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0010	4	4	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0011	4	0	3	0	1	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0012	3	3	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0013	3	3	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0014	3	2	1	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0015	3	0	2	1	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0016	3	3	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0017	3	0	1	0	1	1	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0018	3	3	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0019	2	1	0	0	0	1	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0020	2	2	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0021	2	2	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0022	2	2	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0023	2	2	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0024	1	1	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0025	1	0	1	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0026	1	0	0	1	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0027	1	0	0	1	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0028	1	1	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0029	1	0	0	1	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0030	1	0	0	0	0	1	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0031	1	0	1	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0032	1	0	0	0	0	1	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0033	1	1	0	0	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0034	1	0	0	0	0	1	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	g0035	1	0	0	1	0	0	BLOC1S1	chr12	55711046	55724703
BLOC1S2_chr10_100268293_100291680	0/0	g0001	35	0	7	19	2	7	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0002	10	1	0	7	0	2	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0003	9	3	0	5	0	1	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0004	5	0	2	3	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0005	5	0	2	1	0	2	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0006	5	0	3	0	0	2	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/1	g0007	5	0	3	0	1	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0008	5	4	1	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0009	4	0	1	3	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0010	4	0	2	2	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0011	3	0	1	0	1	1	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0012	3	0	0	3	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0013	3	3	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0014	3	0	0	3	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0015	3	0	0	3	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0016	3	3	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0017	3	0	3	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0018	3	0	0	3	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0019	3	0	0	3	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0020	3	0	0	3	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0021	2	0	0	2	0	0	BLOC1S2	chr10	100268293	100291680