JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BLOC1S2_chr10_100268293_100291680	0/0	g0222	1	0	0	0	0	1	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0223	1	0	0	0	0	1	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0224	1	0	0	0	0	1	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0225	1	0	1	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0226	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0227	1	0	0	0	1	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0228	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0229	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0230	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0231	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0232	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0233	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0234	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0235	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0236	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0237	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0238	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0239	1	0	1	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0240	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0241	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0242	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0243	1	0	1	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0244	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0245	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0246	1	0	0	1	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0247	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0248	1	0	1	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0249	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0250	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0251	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0252	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0253	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0254	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0255	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0256	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	g0257	1	1	0	0	0	0	BLOC1S2	chr10	100268293	100291680
BLOC1S3_chr19_45173784_45186800	1/1	g0001	414	93	77	184	14	44	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	g0002	8	7	1	0	0	0	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	g0003	4	0	0	4	0	0	BLOC1S3	chr19	45173784	45186800
BLOC1S4_chr4_6711174_6722664	1/1	g0000	458	100	78	214	16	48	BLOC1S4	chr4	6711174	6722664
BLOC1S5_chr6_8008567_8069389	0/0	g0001	4	0	1	2	1	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0002	4	0	2	2	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0003	3	0	0	3	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0004	3	0	2	1	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0005	3	1	2	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0006	2	0	0	1	1	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0007	2	0	0	2	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0008	2	1	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0009	2	2	0	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0010	2	0	0	2	0	0	BLOC1S5	chr6	8008567	8069389