JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BLOC1S5_chr6_8008567_8069389	0/0	g0311	1	1	0	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0312	1	1	0	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0313	1	0	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0314	1	0	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0315	1	0	0	0	0	1	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0316	1	0	0	0	0	1	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0317	1	0	0	0	0	1	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0318	1	0	0	0	1	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0319	1	0	0	0	0	1	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0320	1	0	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0321	1	0	0	0	0	1	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0322	1	0	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0323	1	0	0	0	0	1	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0324	1	0	0	0	1	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0325	1	0	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0326	1	0	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0327	1	1	0	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0328	1	0	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0329	1	0	0	0	1	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0330	1	0	0	0	0	1	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0331	1	0	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0332	1	0	1	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0333	1	1	0	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0334	1	1	0	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0335	1	1	0	0	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	g0336	1	0	0	1	0	0	BLOC1S5	chr6	8008567	8069389
BLOC1S6_chr15_45582379_45614708	0/0	g0001	60	9	12	33	1	5	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0002	53	0	10	34	0	9	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0003	15	0	0	10	0	5	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0004	14	0	0	14	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0005	13	0	2	11	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0006	12	0	6	6	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0007	10	0	7	0	2	1	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0008	10	0	0	10	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0009	9	3	6	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0010	8	6	2	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/1	g0011	7	0	0	3	1	2	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0012	6	6	0	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0013	5	3	0	2	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0014	5	5	0	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0015	4	1	2	1	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0016	4	0	0	4	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0017	4	0	3	0	1	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0018	4	4	0	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0019	3	3	0	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0020	3	0	3	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0021	3	2	1	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0022	2	0	2	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0023	2	0	2	0	0	0	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	g0024	2	2	0	0	0	0	BLOC1S6	chr15	45582379	45614708