JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BLTP1_chr4_122147331_122367752	0/0	g0310	1	0	0	0	0	1	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0311	1	0	0	0	0	1	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0312	1	0	0	0	0	1	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0313	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0314	1	0	0	0	0	1	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0315	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0316	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0317	1	0	0	1	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0318	1	0	0	1	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0319	1	0	1	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0320	1	0	0	0	1	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0321	1	0	0	0	0	1	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0322	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0323	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0324	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0325	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0326	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0327	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0328	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0329	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0330	1	0	1	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0331	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0332	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	g0333	1	1	0	0	0	0	BLTP1	chr4	122147331	122367752
BLTP2_chr17_28609446_28650158	1/1	g0001	32	0	11	13	1	5	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0002	16	0	4	9	2	1	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0003	10	0	5	5	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0004	9	1	1	6	0	1	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0005	8	1	0	7	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0006	6	0	0	6	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0007	6	0	0	6	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0008	5	3	2	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0009	4	0	0	4	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0010	4	4	0	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0011	4	0	4	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0012	3	0	0	1	0	2	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0013	3	0	1	0	1	1	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0014	3	0	0	2	0	1	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0015	3	0	0	2	0	1	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0016	3	3	0	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0017	3	1	1	1	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0018	2	2	0	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0019	2	2	0	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0020	2	2	0	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0021	2	1	1	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0022	2	0	0	2	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0023	2	0	2	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0024	2	2	0	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0025	2	0	2	0	0	0	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	g0026	2	2	0	0	0	0	BLTP2	chr17	28609446	28650158