JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BLTP3B_chr12_100032072_100147874	0/0	g0180	1	1	0	0	0	0	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	g0181	1	0	0	0	1	0	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	g0182	1	0	1	0	0	0	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	g0183	1	1	0	0	0	0	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	g0184	1	0	1	0	0	0	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	g0185	1	1	0	0	0	0	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	g0186	1	1	0	0	0	0	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	g0187	1	0	1	0	0	0	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	g0188	1	1	0	0	0	0	BLTP3B	chr12	100032072	100147874
BLVRA_chr7_43753680_43812342	0/0	g0001	10	0	2	5	0	3	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0002	9	0	1	6	0	2	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0003	9	0	3	6	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0004	8	1	4	2	0	1	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0005	6	2	2	1	0	1	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0006	6	0	0	4	1	1	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0007	4	4	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0008	4	4	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0009	4	0	0	4	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0010	3	0	0	3	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0011	3	0	0	3	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0012	3	0	0	3	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0013	3	0	3	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0014	2	2	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0015	2	2	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0016	2	0	1	0	0	1	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0017	2	0	2	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0018	2	0	0	1	1	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0019	2	2	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0020	2	2	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0021	2	0	2	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0022	2	0	1	1	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0023	2	2	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0024	2	2	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/1	g0025	2	0	0	0	1	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0026	2	0	0	2	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0027	2	2	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0028	2	0	1	1	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0029	2	0	1	1	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0030	2	0	0	0	2	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0031	2	0	0	2	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0032	2	0	0	2	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0033	2	0	0	2	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0034	2	0	0	0	2	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0035	2	0	2	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0036	2	0	2	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0037	2	1	0	1	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0038	2	0	0	2	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0039	2	0	0	2	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0040	1	1	0	0	0	0	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	g0041	1	1	0	0	0	0	BLVRA	chr7	43753680	43812342