JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BMP2K_chr4_78771350_78921365	0/0	g0173	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0174	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0175	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0176	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0177	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0178	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0179	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0180	1	0	0	0	0	1	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0181	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0182	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0183	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0184	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0185	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0186	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0187	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0188	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0189	1	0	0	0	0	1	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0190	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0191	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0192	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0193	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0194	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0195	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0196	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0197	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0198	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0199	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0200	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0201	1	1	0	0	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	1/0	g0202	1	0	0	0	0	0	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	g0203	1	0	0	1	0	0	BMP2K	chr4	78771350	78921365
BMP2_chr20_6762686_6785246	0/0	g0001	44	1	5	32	2	4	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0002	38	1	7	22	3	5	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0003	33	0	1	30	0	2	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0004	30	1	1	26	0	2	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0005	18	0	1	13	0	4	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0006	14	2	5	7	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0007	14	0	0	13	1	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0008	12	0	4	1	3	4	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0009	12	0	0	12	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0010	10	0	5	1	2	2	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0011	9	0	7	1	1	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0012	8	0	1	4	1	2	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0013	8	7	1	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0014	6	1	1	2	0	2	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0015	6	5	1	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0016	6	0	6	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	1/0	g0017	5	0	0	4	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0018	5	0	1	1	0	3	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0019	5	0	0	5	0	0	BMP2	chr20	6762686	6785246