JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BMP2_chr20_6762686_6785246	0/0	g0120	1	1	0	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0121	1	1	0	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0122	1	0	0	1	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0123	1	0	1	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0124	1	0	0	1	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0125	1	1	0	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0126	1	1	0	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0127	1	1	0	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0128	1	0	0	1	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0129	1	1	0	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0130	1	1	0	0	0	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0131	1	0	0	0	1	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0132	1	0	0	0	1	0	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0133	1	0	0	0	0	1	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	g0134	1	0	1	0	0	0	BMP2	chr20	6762686	6785246
BMP3_chr4_81025708_81062627	0/1	g0001	25	1	3	15	1	4	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0002	16	0	1	9	3	3	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0003	15	0	2	9	0	4	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0004	14	0	3	10	0	1	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0005	12	2	6	3	0	1	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0006	11	0	0	11	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0007	10	0	5	4	0	1	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0008	8	0	4	3	0	1	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0009	7	0	0	7	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0010	6	0	2	4	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0011	5	1	3	0	1	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0012	5	0	0	3	1	1	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0013	4	3	1	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0014	4	0	0	3	0	1	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0015	4	0	0	4	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0016	4	4	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0017	4	3	1	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0018	4	3	1	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0019	3	3	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0020	3	0	0	3	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0021	3	0	0	3	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0022	3	0	1	2	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0023	3	0	3	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0024	3	2	0	1	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0025	3	0	0	3	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0026	3	2	1	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0027	3	3	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0028	2	0	1	0	1	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0029	2	2	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0030	2	2	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0031	2	2	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0032	2	2	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0033	2	2	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0034	2	0	2	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0035	2	0	0	0	0	2	BMP3	chr4	81025708	81062627