JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BMP3_chr4_81025708_81062627	0/0	g0186	1	1	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0187	1	1	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0188	1	1	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0189	1	1	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0190	1	1	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0191	1	1	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0192	1	1	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0193	1	1	0	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0194	1	0	0	1	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0195	1	0	0	1	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0196	1	0	1	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0197	1	0	1	0	0	0	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	g0198	1	1	0	0	0	0	BMP3	chr4	81025708	81062627
BMP4_chr14_53944736_53961825	0/0	g0001	79	8	12	47	5	7	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/1	g0002	51	1	17	20	4	8	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0003	30	0	5	24	0	1	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0004	20	3	2	13	0	2	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0005	10	8	1	0	1	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0006	10	0	3	7	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0007	10	1	4	2	1	2	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0008	9	0	1	4	1	3	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0009	9	0	0	8	0	1	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0010	8	0	0	6	0	2	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0011	8	6	1	0	0	1	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0012	7	0	3	4	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0013	7	0	1	6	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0014	6	0	0	5	0	1	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0015	6	3	1	2	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0016	6	0	2	3	0	1	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0017	6	3	1	0	0	2	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	1/0	g0018	6	4	1	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0019	5	0	2	3	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0020	5	0	2	3	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0021	5	3	2	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0022	5	5	0	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0023	4	3	1	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0024	4	4	0	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0025	4	0	0	4	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0026	4	1	0	3	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0027	3	0	1	2	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0028	3	0	1	1	0	1	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0029	3	0	0	3	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0030	3	0	3	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0031	3	3	0	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0032	3	3	0	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0033	3	0	0	3	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0034	3	3	0	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0035	2	1	1	0	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0036	2	0	0	2	0	0	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	g0037	2	0	0	2	0	0	BMP4	chr14	53944736	53961825