JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BMX_chrX_15495807_15561519	0/0	g0171	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0172	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0173	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0174	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0175	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0176	1	0	0	0	0	1	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0177	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0178	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0179	1	0	1	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0180	1	0	0	0	0	1	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0181	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0182	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0183	1	0	1	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0184	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0185	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0186	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0187	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0188	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0189	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0190	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	g0191	1	1	0	0	0	0	BMX	chrX	15495807	15561519
BNC1_chr15_83250884_83289664	0/0	g0001	32	0	6	17	2	7	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0002	21	1	1	19	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0003	12	1	1	6	0	4	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0004	12	8	2	1	0	1	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0005	10	1	6	0	3	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0006	7	2	0	4	0	1	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0007	5	0	5	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0008	5	4	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0009	4	0	0	4	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0010	4	4	0	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0011	4	4	0	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0012	3	3	0	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0013	3	3	0	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0014	3	0	0	3	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0015	3	0	0	3	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0016	3	3	0	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0017	3	0	1	0	1	1	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	1/0	g0018	3	0	0	2	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0019	3	0	3	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0020	3	0	3	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0021	3	0	1	0	0	2	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0022	3	2	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0023	3	1	0	0	1	1	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0024	2	2	0	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0025	2	0	0	2	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0026	2	2	0	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0027	2	0	0	2	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0028	2	2	0	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0029	2	0	0	2	0	0	BNC1	chr15	83250884	83289664