JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
BNC1_chr15_83250884_83289664	0/0	g0130	1	0	0	0	1	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0131	1	0	1	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0132	1	0	0	1	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0133	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0134	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0135	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0136	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0137	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0138	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0139	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0140	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0141	1	0	0	0	1	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0142	1	0	1	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0143	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0144	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0145	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0146	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0147	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0148	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0149	1	0	0	0	1	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0150	1	0	1	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0151	1	0	1	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/1	g0152	1	0	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0153	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0154	1	0	1	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0155	1	0	1	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0156	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0157	1	1	0	0	0	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	g0158	1	0	1	0	0	BNC1	chr15	83250884	83289664
BNC2_chr9_16404503_16875670	0/0	g0001	1	0	0	0	1	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0002	1	0	0	0	1	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0003	1	0	0	0	1	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0004	1	0	0	0	1	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0005	1	0	0	0	1	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0006	1	0	0	1	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0007	1	0	0	1	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0008	1	0	0	1	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0009	1	0	0	1	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0010	1	1	0	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0011	1	1	0	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0012	1	1	0	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0013	1	0	1	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0014	1	1	0	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0015	1	1	0	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0016	1	1	0	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0017	1	0	1	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0018	1	0	1	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0019	1	1	0	0	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0020	1	0	0	1	0	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	g0021	1	0	0	1	0	BNC2	chr9	16404503	16875670