JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
UPK3BL2_chr7_102532919_102548696	0/0	g0119	1	0	0	1	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0120	1	0	0	1	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0121	1	1	0	0	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0122	1	1	0	0	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0123	1	1	0	0	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0124	1	1	0	0	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0125	1	1	0	0	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0126	1	1	0	0	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0127	1	0	0	1	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0128	1	1	0	0	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0129	1	1	0	0	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0130	1	0	0	1	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0131	1	0	0	1	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0132	1	0	0	0	1	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0133	1	0	0	1	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0134	1	0	0	1	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0135	1	0	1	0	0	0	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	g0136	1	0	0	0	1	0	UPK3BL2	chr7	102532919	102548696
UPK3B_chr7_76505552_76521522	0/0	g0001	79	6	6	56	2	9	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0002	50	3	10	32	1	4	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0003	35	7	10	7	3	8	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0004	30	16	3	11	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0005	17	0	1	16	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/1	g0006	9	0	4	2	1	1	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0007	9	6	3	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0008	7	1	3	3	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0009	7	7	0	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0010	6	6	0	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0011	5	0	4	0	0	1	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0012	5	5	0	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0013	4	0	2	2	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0014	3	0	0	3	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0015	3	0	2	0	0	1	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0016	3	3	0	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0017	3	2	1	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0018	2	0	0	2	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0019	2	1	1	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0020	2	2	0	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0021	2	0	2	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0022	2	1	1	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0023	2	1	0	0	0	1	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0024	2	2	0	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0025	2	0	0	2	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0026	2	1	1	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0027	2	1	1	0	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0028	2	0	1	0	1	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0029	1	0	0	1	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0030	1	0	0	1	0	0	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0031	1	0	0	0	0	1	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	g0032	1	0	0	1	0	0	UPK3B	chr7	76505552	76521522