JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
UQCC2_chr6_33691764_33716700	0/0	g0090	1	0	1	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0091	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0092	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0093	1	0	0	1	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0094	1	0	1	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0095	1	0	0	1	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0096	1	0	0	0	0	1	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0097	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0098	1	0	1	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0099	1	0	0	1	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0100	1	0	0	0	1	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0101	1	0	1	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0102	1	0	1	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0103	1	0	1	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0104	1	0	0	0	0	1	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0105	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0106	1	0	0	1	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0107	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0108	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0109	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0110	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0111	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0112	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0113	1	1	0	0	0	0	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	g0114	1	0	0	1	0	0	UQCC2	chr6	33691764	33716700
UQCC3_chr11_62666673_62678686	1/1	g0001	325	89	76	112	10	36	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	g0002	3	3	0	0	0	0	UQCC3	chr11	62666673	62678686
UQCC4_chr16_1414752_1425747	1/1	g0001	342	79	67	134	16	44	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	g0002	6	6	0	0	0	0	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	g0003	4	4	0	0	0	0	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	g0004	3	1	2	0	0	0	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	g0005	2	0	2	0	0	0	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	g0006	2	0	2	0	0	0	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	g0007	2	1	1	0	0	0	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	g0008	1	0	0	0	0	1	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	g0009	1	0	0	0	0	1	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	g0010	1	1	0	0	0	0	UQCC4	chr16	1414752	1425747
UQCC5_chr3_52531605_52546890	1/0	g0001	170	28	36	64	10	31	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/1	g0002	111	8	33	58	4	7	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0003	24	24	0	0	0	0	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0004	16	15	1	0	0	0	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0005	11	4	3	4	0	0	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0006	6	5	1	0	0	0	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0007	6	0	3	0	1	2	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0008	6	0	2	4	0	0	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0009	5	0	0	5	0	0	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0010	3	1	0	2	0	0	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0011	3	0	2	0	1	0	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0012	2	0	2	0	0	0	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	g0013	2	0	1	1	0	0	UQCC5	chr3	52531605	52546890