JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
UQCRC1_chr3_48594002_48614646	0/0	g0076	1	1	0	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0077	1	1	0	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0078	1	1	0	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0079	1	1	0	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0080	1	1	0	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0081	1	0	0	0	0	1	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0082	1	1	0	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0083	1	0	1	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0084	1	0	1	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0085	1	0	1	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	g0086	1	0	1	0	0	0	UQCRC1	chr3	48594002	48614646
UQCRC2_chr16_21948361_21988660	0/0	g0001	13	0	0	13	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0002	11	10	1	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0003	9	0	6	3	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0004	9	9	0	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0005	7	0	4	1	1	1	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0006	7	0	0	6	0	1	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0007	6	1	0	5	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0008	5	0	0	5	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0009	5	0	1	4	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0010	5	0	5	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0011	5	0	0	5	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0012	5	0	0	5	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0013	4	0	3	0	0	1	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0014	4	0	2	2	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0015	4	3	1	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0016	4	0	0	4	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0017	4	0	0	4	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0018	3	0	0	1	0	2	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0019	3	3	0	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0020	3	0	0	3	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0021	3	0	0	3	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0022	3	3	0	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0023	3	0	0	0	0	3	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0024	3	3	0	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0025	3	3	0	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0026	2	0	2	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0027	2	2	0	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0028	2	0	0	0	0	2	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0029	2	1	0	1	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0030	2	2	0	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0031	2	2	0	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0032	2	2	0	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0033	2	0	0	2	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0034	2	0	1	1	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0035	2	0	0	1	0	1	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0036	2	0	2	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0037	2	1	0	0	0	1	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0038	2	1	1	0	0	0	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	g0039	2	2	0	0	0	0	UQCRC2	chr16	21948361	21988660