JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
UQCRH_chr1_46298698_46321776	0/0	g0264	1	1	0	0	0	0	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	g0265	1	0	1	0	0	0	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	1/0	g0266	1	0	0	0	0	0	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	g0267	1	1	0	0	0	0	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	g0268	1	1	0	0	0	0	UQCRH	chr1	46298698	46321776
UQCRQ_chr5_132861642_132873847	0/1	g0001	219	66	45	77	8	22	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	1/0	g0002	201	27	30	121	5	17	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	g0003	22	3	0	19	0	0	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	g0004	4	0	1	0	3	0	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	g0005	2	0	1	0	0	1	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	g0006	2	0	1	0	0	1	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	g0007	1	0	0	1	0	0	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	g0008	1	0	0	0	0	1	UQCRQ	chr5	132861642	132873847
URAD_chr13_27972717_27993693	0/1	g0001	47	1	8	33	1	3	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0002	28	0	4	20	0	4	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0003	25	1	9	8	1	6	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0004	20	0	5	15	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0005	17	0	10	5	1	1	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0006	16	4	3	7	0	2	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0007	15	1	2	8	3	1	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0008	12	1	2	8	1	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0009	11	3	1	4	3	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0010	10	2	5	0	2	1	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	1/0	g0011	8	7	0	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0012	7	7	0	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0013	6	5	1	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0014	6	1	1	1	3	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0015	6	3	2	0	1	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0016	5	3	2	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0017	5	0	1	0	1	3	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0018	5	4	1	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0019	4	4	0	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0020	4	0	2	1	0	1	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0021	4	4	0	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0022	4	0	1	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0023	4	2	2	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0024	3	3	0	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0025	3	0	0	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0026	3	0	0	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0027	3	0	0	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0028	3	0	0	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0029	3	0	0	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0030	3	0	0	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0031	3	0	0	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0032	3	0	0	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0033	3	0	2	1	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0034	3	0	0	3	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0035	3	3	0	0	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0036	2	0	0	2	0	0	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	g0037	2	2	0	0	0	0	URAD	chr13	27972717	27993693