JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
USB1_chr16_57996407_58026618	0/0	g0100	1	0	1	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0101	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0102	1	0	0	1	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0103	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0104	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0105	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0106	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0107	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0108	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0109	1	0	1	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0110	1	0	0	0	0	1	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0111	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0112	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0113	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0114	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0115	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0116	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0117	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0118	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0119	1	0	0	1	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0120	1	0	0	1	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0121	1	0	0	1	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0122	1	0	0	0	0	1	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0123	1	0	0	1	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0124	1	0	0	1	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0125	1	0	0	1	0	0	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	g0126	1	1	0	0	0	0	USB1	chr16	57996407	58026618
USE1_chr19_17210357_17224829	0/0	g0001	84	7	17	54	3	3	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0002	78	28	14	26	1	9	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0003	56	0	12	25	5	14	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0004	15	7	3	3	0	2	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0005	14	13	1	0	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0006	13	0	1	11	0	1	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0007	13	6	1	0	3	3	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0008	12	0	4	3	3	2	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0009	10	0	0	10	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0010	7	0	0	7	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0011	7	0	0	7	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0012	6	0	3	3	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0013	6	2	0	4	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0014	5	2	0	3	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0015	4	0	1	3	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0016	4	4	0	0	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0017	4	0	1	3	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0018	4	0	3	0	0	1	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0019	4	4	0	0	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0020	4	1	2	0	1	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0021	4	0	2	0	0	2	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/1	g0022	4	1	1	1	0	0	USE1	chr19	17210357	17224829
USE1_chr19_17210357_17224829	0/0	g0023	3	3	0	0	0	0	USE1	chr19	17210357	17224829