JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
USF1_chr1_161034251_161050977	0/0	g0004	29	2	3	18	2	4	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0005	21	7	6	2	3	3	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	1/0	g0006	21	1	2	11	1	5	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0007	13	2	0	7	1	3	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0008	10	1	4	4	0	1	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0009	8	0	2	3	2	1	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0010	8	1	1	6	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0011	7	0	1	6	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0012	6	5	1	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0013	6	0	0	3	2	1	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0014	6	1	2	1	0	2	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0015	4	0	0	4	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0016	4	0	1	2	0	1	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0017	4	0	0	3	0	1	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0018	3	0	2	1	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0019	3	0	0	3	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0020	3	2	1	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0021	3	1	0	2	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0022	3	0	1	1	0	1	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/1	g0023	3	1	0	0	1	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0024	2	2	0	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0025	2	0	1	0	0	1	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0026	2	0	1	0	1	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0027	2	0	2	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0028	2	0	1	1	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0029	2	2	0	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0030	2	0	0	2	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0031	2	1	0	1	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0032	2	2	0	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0033	2	1	1	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0034	2	0	0	0	1	1	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0035	2	0	2	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0036	2	0	0	2	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0037	2	0	0	0	0	2	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0038	1	0	1	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0039	1	0	0	1	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0040	1	1	0	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0041	1	1	0	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0042	1	0	0	1	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0043	1	0	0	0	0	1	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0044	1	1	0	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0045	1	0	1	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0046	1	0	0	1	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0047	1	0	0	1	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0048	1	1	0	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0049	1	1	0	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0050	1	0	0	1	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0051	1	0	0	1	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0052	1	0	1	0	0	0	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	g0053	1	0	0	1	0	0	USF1	chr1	161034251	161050977