JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
USP20_chr9_129830458_129886828	0/0	g0308	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0309	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0310	1	0	0	0	1	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0311	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0312	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0313	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0314	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0315	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0316	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0317	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0318	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0319	1	0	0	0	0	1	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0320	1	0	1	0	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0321	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0322	1	0	1	0	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0323	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0324	1	1	0	0	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0325	1	0	1	0	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0326	1	0	1	0	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0327	1	0	1	0	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0328	1	1	0	0	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0329	1	0	1	0	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0330	1	0	0	0	0	1	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0331	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0332	1	0	0	0	1	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0333	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0334	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0335	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0336	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0337	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0338	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0339	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0340	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0341	1	1	0	0	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0342	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	g0343	1	0	0	1	0	0	USP20	chr9	129830458	129886828
USP21_chr1_161154500_161170723	1/1	g0001	266	37	51	130	16	30	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0002	27	4	2	19	2	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0003	23	0	5	17	0	1	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0004	11	11	0	0	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0005	10	8	2	0	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0006	5	5	0	0	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0007	4	0	0	4	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0008	3	3	0	0	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0009	3	2	1	0	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0010	2	0	0	2	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0011	2	0	0	2	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0012	2	0	0	2	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0013	1	1	0	0	0	0	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	g0014	1	1	0	0	0	0	USP21	chr1	161154500	161170723