JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BOD1L1_chr4_13563738_13632725	0/0	g0204	1	1	0	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0205	1	0	0	0	0	1	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0206	1	0	0	1	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0207	1	0	0	1	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0208	1	0	0	1	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0209	1	0	0	1	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0210	1	0	0	1	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0211	1	0	0	0	0	1	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0212	1	1	0	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0213	1	1	0	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0214	1	1	0	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0215	1	1	0	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0216	1	0	0	1	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0217	1	0	1	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0218	1	0	0	1	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0219	1	1	0	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0220	1	1	0	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0221	1	1	0	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	g0222	1	0	1	0	0	0	BOD1L1	chr4	13563738	13632725
BOD1L2_chr18_57142087_57155410	1/1	g0000	468	92	78	236	16	44	BOD1L2	chr18	57142087	57155410
BOD1_chr5_173602145_173621650	0/0	g0001	96	4	6	77	2	7	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	1/0	g0002	49	1	14	25	0	8	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0003	42	7	9	19	3	4	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0004	34	3	8	19	2	2	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0005	28	3	4	20	1	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0006	22	2	12	0	6	2	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0007	20	12	5	2	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0008	19	11	5	0	0	3	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0009	11	11	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0010	8	0	2	0	2	4	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0011	6	0	0	6	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0012	6	6	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0013	5	3	2	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0014	4	0	1	0	0	3	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0015	3	0	0	3	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0016	3	0	3	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0017	3	3	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0018	3	3	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0019	2	0	1	0	1	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0020	2	2	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0021	2	2	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0022	2	0	2	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0023	2	2	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0024	2	0	1	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0025	2	2	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0026	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0027	1	0	0	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0028	1	0	0	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0029	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0030	1	1	0	0	0	0	BOD1	chr5	173602145	173621650