JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BOD1_chr5_173602145_173621650	0/0	g0031	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0032	1	0	0	0	1	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0033	1	0	1	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0034	1	0	1	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0035	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0036	1	0	0	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0037	1	0	0	1	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0038	1	0	0	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0039	1	0	0	1	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0040	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0041	1	0	0	1	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0042	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0043	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0044	1	0	0	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0045	1	0	0	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0046	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0047	1	0	0	1	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0048	1	0	0	1	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0049	1	0	0	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0050	1	0	0	1	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0051	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0052	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0053	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0054	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0055	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0056	1	0	1	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0057	1	0	1	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0058	1	0	0	1	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0059	1	0	1	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0060	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0061	1	0	0	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0062	1	0	0	0	0	1	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0063	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/1	g0064	1	0	0	0	0	0	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	g0065	1	1	0	0	0	0	BOD1	chr5	173602145	173621650
BOK_chr2_241553745_241579131	0/0	g0001	25	0	3	20	1	1	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0002	25	0	0	25	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0003	11	3	0	8	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0004	6	0	0	6	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0005	6	0	0	5	0	1	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0006	5	0	1	4	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0007	5	0	4	0	0	1	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0008	5	0	0	5	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0009	4	0	0	0	0	4	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0010	4	0	2	1	0	1	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0011	4	1	0	0	2	1	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/1	g0012	4	0	2	0	0	1	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0013	3	3	0	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0014	3	0	3	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0015	3	0	0	3	0	0	BOK	chr2	241553745	241579131