JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BOK_chr2_241553745_241579131	0/0	g0266	1	1	0	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0267	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0268	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0269	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0270	1	0	1	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0271	1	0	1	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0272	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0273	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0274	1	0	1	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0275	1	0	1	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0276	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0277	1	0	1	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0278	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0279	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0280	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0281	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0282	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0283	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0284	1	0	0	1	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0285	1	0	0	0	1	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0286	1	0	0	0	1	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0287	1	1	0	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0288	1	1	0	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0289	1	1	0	0	0	0	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	g0290	1	1	0	0	0	0	BOK	chr2	241553745	241579131
BOLA1_chr1_149894568_149905795	1/1	g0001	353	95	68	126	14	48	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	g0002	3	0	1	0	0	2	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	g0003	2	2	0	0	0	0	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	g0004	1	1	0	0	0	0	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	g0005	1	0	1	0	0	0	BOLA1	chr1	149894568	149905795
BOLA2B_chr16_30187932_30198666	0/0	g0001	246	58	47	103	14	24	BOLA2B	chr16	30187932	30198666
BOLA2B_chr16_30187932_30198666	0/0	g0002	5	4	1	0	0	0	BOLA2B	chr16	30187932	30198666
BOLA2B_chr16_30187932_30198666	0/0	g0003	3	0	2	1	0	0	BOLA2B	chr16	30187932	30198666
BOLA2_chr16_29448593_29459351	0/0	g0001	168	27	14	103	6	18	BOLA2	chr16	29448593	29459351
BOLA2_chr16_29448593_29459351	0/0	g0002	3	3	0	0	0	0	BOLA2	chr16	29448593	29459351
BOLA2_chr16_29448593_29459351	0/0	g0003	2	0	1	1	0	0	BOLA2	chr16	29448593	29459351
BOLA2_chr16_29448593_29459351	0/0	g0004	1	0	1	0	0	0	BOLA2	chr16	29448593	29459351
BOLA3_chr2_74130400_74152912	0/0	g0001	18	0	3	11	0	4	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0002	16	0	3	13	0	0	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0003	16	0	0	16	0	0	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0004	14	4	6	0	2	2	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0005	12	0	7	4	0	1	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0006	9	1	3	1	1	3	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0007	9	0	3	6	0	0	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0008	8	0	0	8	0	0	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0009	8	0	4	4	0	0	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0010	7	3	4	0	0	0	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0011	5	0	4	1	0	0	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0012	5	5	0	0	0	0	BOLA3	chr2	74130400	74152912
BOLA3_chr2_74130400_74152912	0/0	g0013	5	0	0	5	0	0	BOLA3	chr2	74130400	74152912