JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
USP54_chr10_73492538_73596342	0/0	g0179	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0180	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0181	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0182	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0183	1	0	0	0	0	1	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0184	1	0	1	0	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0185	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0186	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0187	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0188	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0189	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0190	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0191	1	0	0	1	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0192	1	0	1	0	0	0	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	g0193	1	1	0	0	0	0	USP54	chr10	73492538	73596342
USP5_chr12_6847150_6871632	0/0	g0001	118	1	25	67	8	17	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0002	51	20	6	23	1	1	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0003	25	3	11	3	2	6	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0004	19	0	0	19	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0005	14	0	0	14	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	1/0	g0006	13	0	5	0	2	5	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0007	8	0	1	4	0	3	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0008	7	4	3	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0009	6	6	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0010	5	0	0	5	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0011	5	0	0	5	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0012	5	0	2	3	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0013	5	5	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0014	4	3	1	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0015	4	0	0	1	0	3	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0016	4	0	0	4	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0017	4	4	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0018	3	3	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0019	3	3	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/1	g0020	3	1	1	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0021	3	3	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0022	3	3	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0023	3	3	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0024	2	0	0	2	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0025	2	0	0	0	0	2	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0026	2	0	0	2	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0027	2	0	2	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0028	2	2	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0029	2	2	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0030	2	1	0	0	0	1	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0031	2	1	0	0	0	1	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0032	2	2	0	0	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0033	1	0	0	1	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0034	1	0	0	1	0	0	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	g0035	1	0	0	1	0	0	USP5	chr12	6847150	6871632