JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
UST_chr6_148742030_149081990	0/0	g0201	1	0	1	0	0	0	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	g0202	1	0	0	0	1	0	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	g0203	1	0	0	1	0	0	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	g0204	1	0	0	1	0	0	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	g0205	1	1	0	0	0	0	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	g0206	1	1	0	0	0	0	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	g0207	1	0	0	1	0	0	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	g0208	1	0	0	0	0	1	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	g0209	1	1	0	0	0	0	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	g0210	1	1	0	0	0	0	UST	chr6	148742030	149081990
UTF1_chr10_133225217_133236558	1/1	g0001	365	65	72	164	15	47	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	g0002	16	10	2	2	1	1	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	g0003	9	9	0	0	0	0	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	g0004	8	7	1	0	0	0	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	g0005	5	1	3	0	0	1	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	g0006	1	0	0	0	0	1	UTF1	chr10	133225217	133236558
UTP11_chr1_38007734_38029820	0/0	g0001	109	15	14	73	0	7	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0002	34	0	15	5	4	10	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0003	19	0	3	10	2	4	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0004	16	0	2	11	1	2	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0005	16	16	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0006	12	0	4	8	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0007	11	1	4	0	2	4	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0008	9	0	0	9	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0009	7	0	7	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0010	7	0	0	0	3	4	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0011	5	0	0	5	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0012	5	5	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0013	4	4	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0014	4	4	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0015	3	0	0	3	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0016	3	0	0	3	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0017	3	0	0	3	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0018	3	3	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0019	2	2	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0020	2	2	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0021	2	0	2	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0022	2	0	2	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0023	2	0	0	2	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0024	2	2	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0025	2	2	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0026	2	0	0	2	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0027	2	2	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0028	2	2	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0029	2	0	0	2	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0030	2	2	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0031	2	0	0	0	1	1	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0032	2	0	1	0	0	1	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0033	2	2	0	0	0	0	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	g0034	2	0	0	0	0	2	UTP11	chr1	38007734	38029820