JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
UTP14C_chr13_52019691_52038600	0/0	g0009	2	2	0	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0010	2	2	0	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0011	2	2	0	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0012	2	2	0	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0013	2	1	1	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0014	1	0	1	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0015	1	0	0	0	0	1	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0016	1	1	0	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0017	1	1	0	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0018	1	0	0	1	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0019	1	0	0	0	0	1	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0020	1	0	0	1	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0021	1	1	0	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0022	1	1	0	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0023	1	0	0	1	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0024	1	0	0	0	0	1	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0025	1	1	0	0	0	0	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	g0026	1	0	0	0	0	1	UTP14C	chr13	52019691	52038600
UTP15_chr5_73560743_73588380	0/1	g0001	51	4	14	20	2	10	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0002	50	1	7	37	0	5	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0003	44	1	9	24	3	7	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0004	20	2	1	10	3	4	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0005	19	1	6	7	2	3	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	1/0	g0006	17	9	6	0	0	1	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0007	13	11	2	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0008	10	9	1	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0009	8	6	2	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0010	6	0	6	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0011	6	0	0	6	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0012	5	5	0	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0013	5	0	0	5	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0014	4	1	1	0	2	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0015	4	4	0	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0016	4	4	0	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0017	3	0	0	1	0	2	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0018	3	0	2	1	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0019	3	3	0	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0020	3	0	0	3	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0021	2	0	0	2	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0022	2	2	0	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0023	2	1	1	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0024	2	0	2	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0025	2	2	0	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0026	2	0	1	1	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0027	2	0	0	1	1	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0028	2	0	0	1	0	1	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0029	2	0	1	0	0	1	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0030	2	0	0	1	0	1	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0031	1	1	0	0	0	0	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	g0032	1	0	0	1	0	0	UTP15	chr5	73560743	73588380