JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
UTP23_chr8_116761524_116779684	0/0	g0033	1	0	0	1	0	0	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	g0034	1	0	0	1	0	0	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	g0035	1	0	0	1	0	0	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	g0036	1	0	0	0	0	1	UTP23	chr8	116761524	116779684
UTP25_chr1_209822972_209862565	0/0	g0001	43	7	10	13	2	11	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0002	41	0	11	30	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0003	31	0	10	16	0	5	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0004	22	0	2	19	1	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0005	19	0	1	15	0	3	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0006	16	0	8	2	2	4	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0007	10	8	2	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0008	10	1	5	2	1	1	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0009	8	0	0	8	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0010	7	1	0	4	1	1	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0011	6	6	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0012	6	0	0	6	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0013	6	0	6	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0014	5	0	2	3	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0015	5	5	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0016	5	5	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0017	5	0	0	4	0	1	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0018	4	0	1	3	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0019	4	0	0	4	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0020	4	4	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0021	3	0	0	3	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0022	3	0	0	3	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0023	3	3	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0024	3	1	0	1	1	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0025	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0026	2	2	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0027	2	2	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0028	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0029	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0030	2	0	1	0	0	1	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0031	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0032	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0033	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0034	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0035	2	0	1	1	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0036	2	0	0	0	2	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0037	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0038	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0039	2	2	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0040	2	0	0	2	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0041	2	2	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0042	2	0	0	1	1	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0043	2	0	1	1	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0044	2	2	0	0	0	0	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0045	2	0	0	0	0	2	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	g0046	2	0	0	0	2	0	UTP25	chr1	209822972	209862565