JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BOLL_chr2_197721890_197790319	0/0	g0233	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0234	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0235	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0236	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0237	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0238	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0239	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0240	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0241	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0242	1	0	0	0	0	1	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0243	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0244	1	1	0	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0245	1	1	0	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0246	1	0	1	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0247	1	0	1	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0248	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0249	1	1	0	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0250	1	1	0	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0251	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0252	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0253	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0254	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0255	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0256	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0257	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0258	1	0	0	1	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0259	1	0	1	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0260	1	0	0	0	0	1	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0261	1	1	0	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0262	1	1	0	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0263	1	1	0	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0264	1	0	1	0	0	0	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	g0265	1	1	0	0	0	0	BOLL	chr2	197721890	197790319
BOP1_chr8_144257045_144296438	0/0	g0001	3	1	2	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0002	3	0	0	3	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0003	2	2	0	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0004	2	0	0	2	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0005	2	0	0	2	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0006	2	0	0	2	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0007	2	0	0	0	2	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0008	2	0	2	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0009	2	0	0	0	2	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0010	2	2	0	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0011	2	0	0	2	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0012	2	0	2	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0013	2	0	0	2	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0014	2	0	0	2	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0015	2	2	0	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0016	2	0	2	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0017	2	2	0	0	0	0	BOP1	chr8	144257045	144296438