JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
UTS2B_chr3_191262168_191335526	0/0	g0382	1	1	0	0	0	0	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	g0383	1	0	0	1	0	0	UTS2B	chr3	191262168	191335526
UTS2R_chr17_82366765_82382458	1/1	g0001	304	59	45	149	12	37	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0002	24	4	13	0	3	4	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0003	13	13	0	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0004	10	1	8	0	0	1	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0005	6	6	0	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0006	4	4	0	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0007	3	3	0	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0008	3	0	1	1	0	1	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0009	2	0	1	0	1	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0010	1	0	0	1	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0011	1	0	0	1	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0012	1	0	1	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0013	1	0	1	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0014	1	0	1	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0015	1	0	0	0	0	1	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0016	1	0	0	1	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0017	1	0	0	1	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0018	1	0	0	1	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0019	1	0	1	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0020	1	1	0	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0021	1	0	0	1	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0022	1	1	0	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0023	1	1	0	0	0	0	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	g0024	1	1	0	0	0	0	UTS2R	chr17	82366765	82382458
UTS2_chr1_7842612_7858065	0/0	g0001	41	1	10	20	3	7	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0002	37	0	11	25	0	1	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0003	25	1	7	14	0	3	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0004	21	0	1	19	0	1	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0005	20	7	0	12	0	1	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0006	19	0	0	18	0	1	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0007	16	3	0	9	0	4	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0008	16	6	7	0	0	3	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0009	12	0	0	7	0	5	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0010	11	1	3	3	4	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0011	10	0	0	10	0	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0012	8	7	1	0	0	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0013	8	4	0	4	0	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0014	8	0	0	8	0	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0015	7	0	4	0	3	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0016	7	0	0	7	0	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0017	6	0	2	2	1	1	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0018	6	1	0	2	1	2	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0019	6	0	2	0	1	3	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0020	4	1	0	3	0	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0021	4	0	4	0	0	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0022	4	0	0	4	0	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0023	4	4	0	0	0	0	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	g0024	4	4	0	0	0	0	UTS2	chr1	7842612	7858065