JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
UXS1_chr2_106088311_106199301	0/0	g0271	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0272	1	0	0	0	1	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0273	1	0	1	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0274	1	0	1	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0275	1	0	1	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0276	1	0	1	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0277	1	0	1	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0278	1	0	1	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0279	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0280	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0281	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0282	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0283	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0284	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0285	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0286	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0287	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0288	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	1/0	g0289	1	0	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0290	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	g0291	1	1	0	0	0	0	UXS1	chr2	106088311	106199301
UXT_chrX_47646796_47664180	1/1	g0001	121	7	19	73	6	14	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0002	48	14	11	20	0	3	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0003	27	16	1	9	0	1	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0004	23	9	12	1	0	1	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0005	7	0	0	5	0	2	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0006	5	1	1	0	2	1	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0007	4	4	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0008	4	4	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0009	4	3	1	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0010	4	0	0	2	2	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0011	3	3	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0012	3	3	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0013	3	0	0	3	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0014	2	0	0	2	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0015	2	2	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0016	2	2	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0017	2	0	0	2	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0018	2	0	0	2	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0019	1	0	0	1	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0020	1	0	0	1	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0021	1	1	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0022	1	1	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0023	1	0	0	1	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0024	1	0	0	1	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0025	1	0	1	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0026	1	0	0	0	1	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0027	1	1	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0028	1	1	0	0	0	0	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	g0029	1	1	0	0	0	0	UXT	chrX	47646796	47664180