JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VAC14_chr16_70682439_70806158	0/0	g0288	1	0	0	1	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0289	1	0	0	1	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0290	1	0	0	1	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0291	1	0	1	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0292	1	0	0	1	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0293	1	0	0	1	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0294	1	0	0	1	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0295	1	0	0	1	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0296	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0297	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0298	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0299	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0300	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0301	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0302	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0303	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0304	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0305	1	0	0	1	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0306	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0307	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0308	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0309	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0310	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0311	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0312	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0313	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0314	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0315	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0316	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0317	1	1	0	0	0	0	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	g0318	1	0	0	1	0	0	VAC14	chr16	70682439	70806158
VAMP1_chr12_6457237_6475677	0/1	g0001	71	2	11	44	6	7	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0002	43	1	1	37	1	3	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0003	37	3	5	23	0	6	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0004	34	14	13	4	1	2	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0005	31	1	9	18	0	3	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0006	24	3	8	8	0	5	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0007	13	0	0	13	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0008	12	7	1	0	0	4	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0009	11	0	4	2	1	4	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0010	11	9	2	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0011	7	0	3	4	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0012	7	7	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0013	6	0	0	6	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0014	6	0	4	0	2	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0015	6	0	4	0	2	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0016	4	4	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0017	4	0	0	4	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0018	4	0	0	4	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0019	3	3	0	0	0	0	VAMP1	chr12	6457237	6475677