JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VAMP1_chr12_6457237_6475677	0/0	g0070	1	0	1	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0071	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0072	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0073	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0074	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0075	1	0	0	0	0	1	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0076	1	0	1	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0077	1	0	1	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0078	1	0	0	0	1	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0079	1	0	1	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0080	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0081	1	0	0	0	0	1	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0082	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0083	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0084	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0085	1	0	1	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0086	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0087	1	0	1	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0088	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0089	1	0	0	0	0	1	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0090	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0091	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0092	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0093	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0094	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0095	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0096	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0097	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0098	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0099	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0100	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0101	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0102	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0103	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0104	1	1	0	0	0	0	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	g0105	1	0	0	1	0	0	VAMP1	chr12	6457237	6475677
VAMP2_chr17_8154149_8167948	0/0	g0001	44	8	2	34	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/1	g0002	43	12	13	11	2	4	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0003	39	11	7	11	2	8	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0004	20	0	1	17	1	1	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	1/0	g0005	19	8	7	0	0	3	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0006	17	0	0	17	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0007	15	1	2	12	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0008	15	2	7	1	2	3	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0009	12	2	5	2	2	1	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0010	12	0	3	8	0	1	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0011	11	0	1	7	0	3	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0012	9	0	3	1	2	3	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0013	9	0	0	9	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0014	7	0	1	6	0	0	VAMP2	chr17	8154149	8167948