JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VAMP2_chr17_8154149_8167948	0/0	g0065	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0066	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0067	1	1	0	0	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0068	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0069	1	1	0	0	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0070	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0071	1	1	0	0	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0072	1	1	0	0	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0073	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0074	1	0	0	0	0	1	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0075	1	0	1	0	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0076	1	0	0	0	1	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0077	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0078	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0079	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0080	1	0	0	0	0	1	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0081	1	0	0	0	1	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0082	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0083	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0084	1	0	0	1	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0085	1	1	0	0	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0086	1	0	1	0	0	0	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	g0087	1	1	0	0	0	0	VAMP2	chr17	8154149	8167948
VAMP3_chr1_7766296_7786432	0/0	g0001	95	25	12	45	3	10	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0002	73	10	9	43	3	8	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0003	41	0	7	33	0	1	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0004	27	1	14	5	3	4	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0005	22	0	0	22	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0006	17	0	6	7	0	4	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0007	17	0	5	12	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0008	13	0	0	13	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0009	11	9	2	0	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0010	11	3	6	0	0	2	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0011	11	11	0	0	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0012	9	0	0	9	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0013	6	6	0	0	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0014	6	1	1	1	1	2	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0015	6	6	0	0	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0016	5	5	0	0	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0017	5	1	1	0	3	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0018	4	0	0	4	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0019	4	0	0	4	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0020	4	0	0	4	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	1/1	g0021	3	0	0	0	1	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0022	2	1	1	0	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0023	2	0	1	0	1	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0024	2	2	0	0	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0025	2	0	0	1	0	1	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0026	2	0	2	0	0	0	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	g0027	2	0	1	0	0	1	VAMP3	chr1	7766296	7786432