JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VAMP4_chr1_171695160_171747065	0/0	g0260	1	1	0	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0261	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0262	1	0	1	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0263	1	0	0	0	1	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0264	1	0	1	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0265	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0266	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0267	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0268	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0269	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0270	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0271	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0272	1	1	0	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0273	1	0	1	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0274	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0275	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0276	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0277	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0278	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0279	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0280	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0281	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0282	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0283	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0284	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0285	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0286	1	1	0	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0287	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0288	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0289	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0290	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0291	1	0	1	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0292	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0293	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0294	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0295	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0296	1	1	0	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0297	1	1	0	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0298	1	1	0	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0299	1	1	0	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0300	1	1	0	0	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0301	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	g0302	1	0	0	1	0	0	VAMP4	chr1	171695160	171747065
VAMP5_chr2_85579431_85598406	1/0	g0001	86	0	14	57	1	13	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/1	g0002	52	0	13	25	5	8	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	g0003	39	10	1	22	1	5	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	g0004	32	0	0	31	0	1	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	g0005	22	3	8	9	0	2	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	g0006	13	1	9	0	1	2	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	g0007	12	1	0	11	0	0	VAMP5	chr2	85579431	85598406