JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VAMP7_chrX_155876345_155948769	0/0	g0157	1	1	0	0	0	0	VAMP7	chrX	155876345	155948769
VAMP7_chrX_155876345_155948769	0/0	g0158	1	1	0	0	0	0	VAMP7	chrX	155876345	155948769
VAMP7_chrX_155876345_155948769	1/0	g0159	1	0	0	0	0	0	VAMP7	chrX	155876345	155948769
VAMP8_chr2_85572586_85587031	1/1	g0001	128	14	23	63	5	21	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0002	94	27	9	45	4	9	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0003	42	10	10	13	0	9	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0004	36	2	2	24	1	7	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0005	20	2	1	15	0	2	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0006	17	0	16	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0007	9	0	1	6	1	1	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0008	8	8	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0009	6	0	3	1	2	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0010	6	6	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0011	5	0	1	4	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0012	5	5	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0013	4	0	0	3	0	1	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0014	4	3	1	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0015	4	2	2	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0016	3	3	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0017	3	0	2	0	1	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0018	3	3	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0019	2	0	1	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0020	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0021	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0022	1	1	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0023	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0024	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0025	1	1	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0026	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0027	1	1	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0028	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0029	1	0	1	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0030	1	0	1	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0031	1	0	1	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0032	1	0	1	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0033	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0034	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0035	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0036	1	0	1	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0037	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0038	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0039	1	1	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0040	1	0	0	1	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0041	1	1	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0042	1	1	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0043	1	1	0	0	0	0	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	g0044	1	0	1	0	0	0	VAMP8	chr2	85572586	85587031
VANGL1_chr1_115636970_115703221	0/0	g0001	3	0	2	0	0	1	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0002	3	0	2	0	1	0	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	g0003	2	0	0	2	0	0	VANGL1	chr1	115636970	115703221