JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VAPB_chr20_58384229_58456101	0/0	g0345	1	1	0	0	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0346	1	0	0	1	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0347	1	0	0	1	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0348	1	0	0	1	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0349	1	0	1	0	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0350	1	0	1	0	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0351	1	0	1	0	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0352	1	0	1	0	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0353	1	0	1	0	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0354	1	0	1	0	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0355	1	0	1	0	0	0	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0356	1	0	0	0	0	1	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	g0357	1	0	0	1	0	0	VAPB	chr20	58384229	58456101
VARS1_chr6_31772518_31800752	0/0	g0001	36	1	13	13	5	4	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0002	19	1	8	10	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0003	11	4	2	0	2	3	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0004	10	0	0	10	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0005	8	0	0	7	0	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0006	7	0	0	7	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0007	7	1	0	2	1	3	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0008	7	0	0	7	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0009	7	0	4	1	0	2	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0010	6	1	3	0	2	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0011	6	1	3	0	1	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0012	6	0	0	5	0	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0013	6	0	0	5	1	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0014	5	0	0	5	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0015	5	5	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0016	5	5	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0017	5	0	2	3	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0018	4	0	0	4	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0019	4	0	0	3	0	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0020	4	3	1	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0021	3	0	0	2	0	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0022	3	1	0	2	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0023	3	0	2	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0024	3	2	1	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0025	3	3	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0026	3	3	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0027	3	0	1	0	2	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0028	3	0	2	0	0	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0029	2	1	1	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0030	2	0	0	2	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0031	2	0	0	2	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/1	g0032	2	0	1	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0033	2	0	0	2	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0034	2	2	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0035	2	2	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0036	2	0	0	1	0	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0037	2	0	0	0	0	2	VARS1	chr6	31772518	31800752