JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BOP1_chr8_144257045_144296438	0/0	g0368	1	0	0	1	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0369	1	1	0	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0370	1	0	1	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0371	1	1	0	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0372	1	0	1	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0373	1	1	0	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0374	1	1	0	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0375	1	1	0	0	0	0	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	g0376	1	0	0	1	0	0	BOP1	chr8	144257045	144296438
BORA_chr13_72722923_72761196	0/0	g0001	22	0	8	9	1	4	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0002	19	0	0	17	1	1	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0003	17	0	1	13	1	2	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0004	14	1	0	12	0	1	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0005	10	0	3	3	1	3	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0006	10	9	1	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0007	10	6	1	2	0	1	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/1	g0008	8	0	2	0	3	2	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0009	8	0	0	8	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0010	6	0	0	6	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0011	4	0	0	4	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0012	4	0	3	0	1	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0013	4	0	0	4	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0014	4	0	0	4	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0015	4	0	1	2	0	1	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0016	4	3	1	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0017	3	0	0	3	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0018	3	0	0	3	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0019	3	1	1	1	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0020	3	0	0	3	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0021	3	0	1	2	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0022	3	0	0	3	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0023	3	0	0	3	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0024	3	3	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0025	3	0	1	2	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0026	3	0	0	0	0	3	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0027	3	3	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0028	3	3	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0029	3	3	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0030	2	0	1	0	1	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0031	2	0	1	0	0	1	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0032	2	0	2	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0033	2	0	0	2	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0034	2	0	2	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0035	2	0	2	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0036	2	0	0	2	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0037	2	0	0	2	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0038	2	0	0	0	0	2	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0039	2	0	2	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0040	2	0	1	0	1	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0041	2	0	0	2	0	0	BORA	chr13	72722923	72761196