JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VARS1_chr6_31772518_31800752	0/0	g0188	1	1	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0189	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0190	1	1	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0191	1	1	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0192	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0193	1	0	1	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0194	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0195	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0196	1	0	1	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0197	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0198	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0199	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0200	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0201	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0202	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0203	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0204	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0205	1	1	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0206	1	1	0	0	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0207	1	0	0	0	0	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0208	1	0	0	0	0	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0209	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0210	1	0	0	0	0	1	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0211	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0212	1	0	0	1	0	0	VARS1	chr6	31772518	31800752
VARS1_chr6_31772518_31800752	0/0	g0213	1	1	0	0	0	0	VARS1	chr6	31772518	31800752
VARS2_chr6_30909238_30931459	0/0	g0001	69	7	5	44	5	8	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0002	55	1	17	26	2	9	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0003	28	7	2	18	0	1	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0004	20	8	3	5	1	3	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0005	20	9	7	0	2	2	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0006	16	0	0	16	0	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0007	15	1	7	6	0	1	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0008	15	0	4	10	0	1	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0009	14	0	8	6	0	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/1	g0010	11	0	0	4	1	5	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0011	11	0	2	8	0	1	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0012	11	2	4	0	1	4	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0013	10	10	0	0	0	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0014	8	7	1	0	0	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0015	8	3	1	1	1	2	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0016	7	6	1	0	0	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0017	6	3	0	3	0	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0018	6	6	0	0	0	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0019	6	0	0	6	0	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0020	5	0	3	0	1	1	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0021	4	2	0	1	1	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0022	4	2	2	0	0	0	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0023	3	0	0	0	0	3	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	g0024	3	0	0	3	0	0	VARS2	chr6	30909238	30931459