JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VASH1_chr14_76756468_76788015	1/0	g0202	1	0	0	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0203	1	0	0	0	0	1	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0204	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0205	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0206	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0207	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0208	1	1	0	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0209	1	1	0	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0210	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0211	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0212	1	1	0	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0213	1	1	0	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0214	1	0	0	0	0	1	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0215	1	0	1	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0216	1	0	0	0	0	1	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0217	1	0	0	0	1	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0218	1	1	0	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0219	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0220	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0221	1	1	0	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0222	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0223	1	0	0	1	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0224	1	1	0	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0225	1	1	0	0	0	0	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	g0226	1	1	0	0	0	0	VASH1	chr14	76756468	76788015
VASH2_chr1_212945541_212996585	0/0	g0001	12	0	0	7	0	5	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0002	9	0	0	9	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0003	9	0	2	7	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0004	8	0	2	6	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0005	7	0	0	7	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0006	6	0	0	6	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0007	5	0	5	0	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0008	5	0	5	0	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0009	4	0	1	0	3	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0010	4	3	1	0	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0011	3	0	0	0	3	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0012	3	0	2	0	0	1	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0013	3	0	0	3	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0014	3	0	0	3	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0015	3	3	0	0	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0016	3	0	2	1	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0017	3	3	0	0	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0018	2	0	2	0	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0019	2	0	0	2	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0020	2	0	0	2	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0021	2	0	0	2	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0022	2	0	2	0	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0023	2	0	0	2	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0024	2	0	0	2	0	0	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	g0025	2	2	0	0	0	0	VASH2	chr1	212945541	212996585