JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VAT1L_chr16_77783564_77985107	0/0	g0334	1	0	0	1	0	0	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	g0335	1	0	0	0	0	1	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	g0336	1	0	0	0	0	1	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	g0337	1	0	0	0	1	0	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	g0338	1	0	1	0	0	0	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	g0339	1	0	0	0	0	1	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	g0340	1	0	1	0	0	0	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	g0341	1	0	0	0	1	0	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	g0342	1	0	0	1	0	0	VAT1L	chr16	77783564	77985107
VAT1_chr17_43009607_43027385	0/0	g0001	36	0	7	23	1	5	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0002	12	1	5	5	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0003	11	5	2	2	0	2	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0004	11	1	1	9	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0005	9	4	1	1	2	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0006	7	0	0	7	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0007	7	1	0	4	1	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0008	6	1	0	4	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0009	6	0	2	3	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0010	6	0	4	0	0	2	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/1	g0011	5	0	1	0	0	3	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0012	5	0	2	1	0	2	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0013	5	0	2	0	0	3	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0014	4	0	0	2	1	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0015	4	3	1	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0016	4	0	4	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0017	4	0	0	4	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0018	4	4	0	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0019	3	0	0	3	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0020	3	0	2	0	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0021	3	3	0	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0022	3	0	0	2	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0023	3	0	0	3	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0024	3	3	0	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0025	3	2	1	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0026	3	2	1	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0027	3	3	0	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0028	3	3	0	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0029	3	3	0	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0030	3	3	0	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0031	2	0	0	1	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0032	2	1	0	0	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0033	2	0	1	0	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0034	2	0	0	2	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0035	2	0	0	2	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0036	2	0	0	1	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0037	2	0	0	1	0	1	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0038	2	0	1	1	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0039	2	0	0	0	0	2	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0040	2	2	0	0	0	0	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	g0041	2	2	0	0	0	0	VAT1	chr17	43009607	43027385