JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BORA_chr13_72722923_72761196	0/0	g0192	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	1/0	g0193	1	0	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0194	1	0	0	1	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0195	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0196	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0197	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0198	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0199	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0200	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0201	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0202	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0203	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0204	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	g0205	1	1	0	0	0	0	BORA	chr13	72722923	72761196
BORCS6_chr17_8183345_8195180	1/1	g0000	416	90	78	186	16	44	BORCS6	chr17	8183345	8195180
BORCS7_chr10_102849259_102869961	0/0	g0001	52	10	7	22	4	9	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/1	g0002	47	3	9	25	2	7	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0003	41	13	12	11	5	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0004	30	1	7	18	1	3	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0005	29	24	3	1	0	1	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0006	15	0	0	15	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0007	14	0	5	9	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0008	14	0	1	13	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0009	11	0	0	10	0	1	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0010	9	1	5	3	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0011	8	0	0	8	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0012	8	0	2	3	0	3	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0013	7	0	1	6	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0014	6	0	0	0	0	6	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0015	6	0	0	6	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0016	5	5	0	0	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0017	4	0	0	4	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0018	4	1	1	2	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0019	3	0	2	1	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0020	3	0	2	1	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0021	3	0	3	0	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0022	3	0	3	0	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0023	3	3	0	0	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0024	3	3	0	0	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0025	3	0	1	0	1	1	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0026	3	3	0	0	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0027	3	2	1	0	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0028	3	0	0	3	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0029	2	0	0	0	2	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0030	2	0	0	2	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0031	2	0	2	0	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0032	2	1	0	1	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0033	2	0	0	2	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0034	2	0	0	2	0	0	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	g0035	2	0	0	0	0	2	BORCS7	chr10	102849259	102869961