JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VAX2_chr2_70895576_70938446	0/0	g0282	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0283	1	0	1	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0284	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0285	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0286	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0287	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0288	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0289	1	0	1	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0290	1	0	1	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0291	1	0	1	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0292	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0293	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0294	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0295	1	0	1	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0296	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0297	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0298	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0299	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0300	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0301	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0302	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0303	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0304	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0305	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0306	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0307	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0308	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0309	1	0	1	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0310	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0311	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0312	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0313	1	0	0	1	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0314	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	g0315	1	1	0	0	0	0	VAX2	chr2	70895576	70938446
VBP1_chrX_155211460_155244841	0/1	g0001	53	2	13	30	2	5	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0002	12	0	1	8	3	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0003	11	0	3	7	0	1	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0004	9	0	0	4	0	5	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0005	6	6	0	0	0	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0006	6	0	5	1	0	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	1/0	g0007	4	3	0	0	0	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0008	4	0	3	0	0	1	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0009	4	4	0	0	0	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0010	3	0	0	3	0	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0011	3	2	0	0	0	1	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0012	3	3	0	0	0	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0013	3	3	0	0	0	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0014	3	0	3	0	0	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0015	3	0	0	3	0	0	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	g0016	2	1	1	0	0	0	VBP1	chrX	155211460	155244841