JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
VCAM1_chr1_100714742_100744045	0/0	g0292	1	0	0	0	0	1	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0293	1	0	0	0	0	1	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0294	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0295	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0296	1	0	0	0	0	1	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0297	1	0	1	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0298	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0299	1	0	1	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0300	1	0	1	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0301	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0302	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0303	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0304	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0305	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0306	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0307	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0308	1	0	0	0	0	1	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0309	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0310	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0311	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0312	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0313	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0314	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0315	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0316	1	0	0	0	0	1	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0317	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0318	1	0	1	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0319	1	0	0	1	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0320	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0321	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0322	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0323	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0324	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0325	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0326	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	g0327	1	1	0	0	0	0	VCAM1	chr1	100714742	100744045
VCAN_chr5_83466744_83587302	0/0	g0001	6	0	0	5	0	1	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0002	3	0	0	3	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0003	3	0	0	3	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0004	2	0	0	2	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0005	2	2	0	0	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0006	2	0	0	2	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0007	2	0	0	2	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0008	2	0	2	0	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0009	2	0	0	2	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0010	2	0	0	0	2	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0011	2	2	0	0	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0012	2	0	0	2	0	0	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0013	2	0	0	0	0	2	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	g0014	2	2	0	0	0	0	VCAN	chr5	83466744	83587302